Research Articles
From Branches to Webs: How Phylogenetics Redefines Life's Diversity
Explore how modern phylogenetic approaches are uncovering the dynamic processes of evolutionary diversification and reshaping our understanding of life's history.
Beyond Falsification: How Modern Evolutionary Biology Outgrew a Philosophical Ideal
Exploring how modern phylogenetics has moved beyond Popper's falsificationism to embrace data-rich, model-based approaches in evolutionary biology.
Cracking Evolution's Code: How Smodels Solves Phylogenetic Puzzles Piece by Piece
Discover how Smodels and answer set programming revolutionize quartet-based phylogeny construction, solving complex evolutionary puzzles with computational precision.
Solving Evolution's Jigsaw Puzzle: How Pseudo-Boolean Optimization Cracks the Quartet Code
Exploring how pseudo-Boolean optimization solves the Maximum Quartet Consistency problem in evolutionary biology and phylogenetic tree reconstruction.
Beyond the Branches: The Hidden Limits of Evolutionary Trees
Exploring the limitations and challenges of phylogenetic trees in comparative biology and evolutionary research.
Unlocking the Tree of Life: The Algorithms Revolutionizing Evolutionary Biology
Explore how innovative algorithms are transforming evolutionary biology by enabling comparison, compression, and sharing of massive phylogenetic tree collections.